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I'm shooting in the dark here, but you can try rerunning the software update from the command line:
type "softwareupdate --list" to see if it wants to install anything that seems relevant.
If so, type "softwareupdate --install [name]", where [name] is the thing that showed up in the listing.
Apples-Computer: ~apple$
That means you are in what appears to be a bash shell with the current directory being the home directory of a user named 'apple'. That's all I've got.
Tom, it says:
Software Update Tool
Copyright 2002-2005 Apple
Does that mean it doesn't want to install anything, or that it wants to reinstall the Software Update Tool?
Apples-Computer: ~apple$
I was tempted to tell you to type
open podbaydoor
but that'd be mean....
Wait, it just added more...
Okay, it's listing the XServe Raid Driver, and the Airport.
We don't use either of those things.
[eta:
open podbaydoor
And I'd be tempted to try it, except I'm afraid of what it might do...]
What does "uname -v" output?
(Took me a while to copy it down)
Darwin Kernel Version 8.4.0: Jan 3 18:22:10 PST 2006; root:xnu - 792.6.56.obj~1/RELEASE_PPC
Apples-Computer:~apple$ in_delmulti -ignoring invalid imn (0x656e00x0)
You're not actually in Safe Mode. To get safe mode you're supposed to power up the Mac and hold the shift key starting just after your hear the boot chime, then you release it when you see the grey screen with the Apple logo. It should say safe mode on the boot screen after that.
Huh. It looks like your computer thinks it installed the update correctly. Obviously, it didn't.
I don't know what to advise at this point, other than to boot the thing in FireWire target mode, back up the disk, and then reinstall the OS.
To get safe mode you're supposed to power up the Mac and hold the shift key starting just after your hear the boot chime, then you release it when you see the grey screen with the Apple logo.
Huh...okay, let me try that. I may have timed it wrong.